Silent Acid Reflux Question?

Found out I had silent acid reflux when i went to an ENT for my throat feeling swollen and at times feeling like I was an asthmatic. This came on after downing garden grape tomatoes for weeks like candy. Don't usually have this issue. Dr. put me on an oral acid inhibitor once a day , liquid gaviscon after meals, & a strict GERD diet to be on for at least 6 wks. After a few weeks I had to up to two acid inhibitors a day. Now it feels like I'm sensitive to everything, even start to feel different in my throat and chest when I drink tepid water. My question is, should I have stopped eating tomatoes and rode it out till I felt better? I feel like the medicine has made me more sensitive to everything.

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